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Pull requests: malariagen/malariagen-data-python

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Pull requests list

Add helper function to explain general_metadata queries
#1174 opened Mar 20, 2026 by vshnvii Loading…
docs: add missing parameter docs for taxa and areas in plot_frequencies_time_series
#1173 opened Mar 20, 2026 by isobelnolan Loading…
minor code refactor in genome_sequence funcion
#1172 opened Mar 20, 2026 by Kaustubh2k5 Loading…
feat: Improve extra metadata UX and prevent duplicate columns (#1168)
#1169 opened Mar 20, 2026 by khushthecoder Loading…
feat: add list_taxons and list_species_calls utilities to SampleMetadata
#1164 opened Mar 20, 2026 by Aadik1ng Loading…
refactor: tighten type annotations for cache variables in sample_metadata.py
#1157 opened Mar 19, 2026 by faizavk Loading…
1
refactor: extract AnophelesDiversityAnalysis into anoph/Diversity.py
#1153 opened Mar 18, 2026 by Srivatsanray Loading…
fix: raise clear error when window_size is too large
#1152 opened Mar 18, 2026 by suhr25 Loading…
6
Add type hints and comprehensive docstrings to utility functions in util.py
#1142 opened Mar 17, 2026 by aadi-9 Loading…
6
docs: expand docstrings in amino_acid_distance, util, and anopheles
#1135 opened Mar 16, 2026 by Komal2022 Loading…
4
Fix bug 929
#1134 opened Mar 16, 2026 by GeamXD Loading…
Fix TODO strings returned as variant effect values in veff.py (Fixes #916)
#1133 opened Mar 16, 2026 by GeamXD Loading…
1
docs: document year=-1 sentinel convention for lab crosses in sample_metadata()
#1131 opened Mar 16, 2026 by sallykinyua Loading…
1
Add LD-pruned biallelic SNP access method
#1130 opened Mar 15, 2026 by adilraza99 Loading…
1
3
refactor: tighten type annotations for cache variables in snp_data.py
#1129 opened Mar 15, 2026 by faizavk Loading…
2
chore: remove duplicate cache constant definitions in ag3.py and af1.py
#1128 opened Mar 15, 2026 by faizavk Loading…
# Feat: Add get_metadata_schema Helper for Sample Metadata Introspection
#1124 opened Mar 15, 2026 by rajat552 Loading…
1
4
Improve PLINK filename hashing with canonicalized parameters and SHA256
#1122 opened Mar 14, 2026 by mithil27360 Loading…
1
2
Fix: include sample-selection parameters in PLINK output filename
#1121 opened Mar 14, 2026 by Mowblow Loading…
1
docs: fix pipx documentation link in contributing guide
#1119 opened Mar 14, 2026 by star-lord1234 Loading…
1
Add exploratory notebook for FASTQ-based mosquito taxon classification
#1118 opened Mar 14, 2026 by PrakharLal Loading…
1
Prevent PLINK filename collisions by hashing content-affecting selection parameters
#1114 opened Mar 14, 2026 by rehanxt5 Loading…
1
Add Windows development setup guide for first-time contributors
#1112 opened Mar 14, 2026 by aman-dev-maker Loading…
2
Docs: clarify Poetry dev install and running tests
#1111 opened Mar 13, 2026 by Pradeep18102003 Loading…
1
2
fix: replace truthiness checks with is not None in PlasmodiumDataResource._subset_genome_sequence_region
#1109 opened Mar 13, 2026 by Gopisokk Loading…
1
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