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Bump the python-requirements group in /envs with 22 updates#33

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Bump the python-requirements group in /envs with 22 updates#33
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@dependabot dependabot bot commented on behalf of github Feb 27, 2026

Bumps the python-requirements group in /envs with 22 updates:

Package From To
simpleitk 2.5.0 2.5.3
coverage 7.8.2 7.13.4
einops 0.8.1 0.8.2
jupyterlab 4.4.3 4.5.5
kaggle 1.7.4.5 2.0.0
matplotlib 3.10.1 3.10.8
monai 1.4.0 1.5.2
nibabel 5.3.2 5.3.3
pandas 2.2.3 3.0.1
plotly 6.1.2 6.5.2
pre-commit 4.2.0 4.5.1
pytest-cov 6.1.1 7.0.0
pytest-mock 3.14.1 3.15.1
pytest 8.3.5 9.0.2
rich 14.0.0 14.3.3
ruff 0.11.12 0.15.4
safetensors 0.5.3 0.7.0
scikit-image 0.25.2 0.26.0
scikit-learn 1.6.1 1.8.0
scipy 1.15.2 1.17.1
timm 1.0.15 1.0.25
wandb 0.19.11 0.25.0

Updates simpleitk from 2.5.0 to 2.5.3

Release notes

Sourced from simpleitk's releases.

Release v2.5.3

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.3

What's Changed

Security Fixes

  • Addresses Out-of-Bounds vulnerability with a malformed DICOM file containing encapsulated PixelData fragments. The fix is contained in ITK 5.4.5.

Full Changelog: SimpleITK/SimpleITK@v2.5.2...v2.5.3

Release v2.5.2

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.2

What's Changed

Full Changelog: SimpleITK/SimpleITK@v2.5.0...v2.5.2

Commits
  • 31617da Update to version 2.5.3
  • 5937c05 Merge pull request #2449 from blowekamp/update_itk_5.4.5
  • d438c32 Merge pull request #2450 from blowekamp/fix_package_checksums_step
  • f1b459d Update to windows-2022 in Build CI on release
  • 15c52b3 Update superbuild ITK version to 5.4.5 release
  • 99250b5 Fix generation of checksums
  • 54242a2 Merge pull request #2446 from blowekamp/fix_release_package_docker
  • 88292a2 Update docker based package builds to use external source
  • 8b3b92a Merge pull request #2419 from blowekamp/support_rosetta
  • a6f07f0 Use rossetta arch command to run python executable
  • Additional commits viewable in compare view

Updates coverage from 7.8.2 to 7.13.4

Changelog

Sourced from coverage's changelog.

Version 7.13.4 — 2026-02-09

  • Fix: the third-party code fix in 7.13.3 required examining the parent directories where coverage was run. In the unusual situation that one of the parent directories is unreadable, a PermissionError would occur, as described in issue 2129_. This is now fixed.

  • Fix: in test suites that change sys.path, coverage.py could fail with "RuntimeError: Set changed size during iteration" as described and fixed in pull 2130_. Thanks, Noah Fatsi.

  • We now publish ppc64le wheels, thanks to Pankhudi Jain <pull 2121_>_.

.. _pull 2121: coveragepy/coveragepy#2121 .. _issue 2129: coveragepy/coveragepy#2129 .. _pull 2130: coveragepy/coveragepy#2130

.. _changes_7-13-3:

Version 7.13.3 — 2026-02-03

  • Fix: in some situations, third-party code was measured when it shouldn't have been, slowing down test execution. This happened with layered virtual environments such as uv sometimes makes. The problem is fixed, closing issue 2082_. Now any directory on sys.path that is inside a virtualenv is considered third-party code.

.. _issue 2082: coveragepy/coveragepy#2082

.. _changes_7-13-2:

Version 7.13.2 — 2026-01-25

  • Fix: when Python is installed via symlinks, for example with Homebrew, the standard library files could be incorrectly included in coverage reports. This is now fixed, closing issue 2115_.

  • Fix: if a data file is created with no read permissions, the combine step would fail completely. Now a warning is issued and the file is skipped. Closes issue 2117_.

.. _issue 2115: coveragepy/coveragepy#2115 .. _issue 2117: coveragepy/coveragepy#2117

... (truncated)

Commits

Updates einops from 0.8.1 to 0.8.2

Commits

Updates jupyterlab from 4.4.3 to 4.5.5

Release notes

Sourced from jupyterlab's releases.

v4.5.5

4.5.5

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​apoorvdarshan (activity) | @​bollwyvl (activity) | @​itsmevichu (activity) | @​jasongrout (activity) | @​krassowski (activity)

v4.5.4

4.5.4

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

... (truncated)

Commits
  • 72d29f4 [ci skip] Publish 4.5.5
  • 4a223c0 Backport PR #18530 on branch 4.5.x (Fix theme settings broken in non-English ...
  • 2d54b65 Backport PR #18531 on branch 4.5.x (Fix comms subshell resource management on...
  • 5f01903 Update to marked 17.0.2 and mermaid 11.12.3 (#18532)
  • 1fa6809 Backport PR #18479 on branch 4.5.x (Upgrade @​codemirror/view, fixing slow sel...
  • 277f814 Backport PR #18503 on branch 4.5.x (Only turn off overflow anchor when window...
  • b824b96 Backport PR #18411 on branch 4.5.x (Fix table of contents navigation for Mark...
  • 2ecc1ee [ci skip] Publish 4.5.4
  • 19f81fc Backport PR #18474 on branch 4.5.x (Avoid using system clipboard in Notebook ...
  • b82e6d7 Backport PR #18466 on branch 4.5.x (Update CodeMirror versions, fixing a few ...
  • Additional commits viewable in compare view

Updates kaggle from 1.7.4.5 to 2.0.0

Changelog

Sourced from kaggle's changelog.

2.0.0

  • General Availability release
  • Change more "instance" to "variation"
  • Update link for the integration test auth instructions (#926)
  • Fix string formatting in upgrade nudge message (#928) Thanks PythonicVarun!

1.8.4

  • Rename kaggle-api to kaggle-cli
  • Allow auth to happen multiple times (#922)
  • Add --acc to set accelerator for: kaggle kernels push ... (#907)
  • Add automatic retry and resume to download_file (#905) Thanks katoue!
  • Restore model validation check (#902)
  • Add file pattern matching in output download (#901) Thanks piotr-ginal!

1.8.3

  • Add packaging dep (#883)
  • Add version checking against server known-version (#880)
  • Fix edit error (#876)
  • Use kagglesdk from pypi (#875)
  • Fix Kaggle access token auth KeyError when KAGGLE_API_TOKEN is unset (#874)

1.8.2

  • Changes to build script

1.8.1

  • Fix memory exhaustion when downloading large files (#869)
  • Add python-dateutil to pyproject.toml dependencies (#866)

1.8.0

  • Fix resumable download error (#865)
  • Fix dataset version spec (#862)
  • Add machine_shape to the metadata of kaggle kernels pull (#856)
  • Add pagination options to models
  • Add pagination options for submissions (#832)
  • Add pagination options to list commands (#815)
  • Add canonical aliases for push/pull (#787)
  • Add parquet as a filter option (#786)
  • Add variations as alt for instances (#784)
  • Enable (and rename) synonyms i and v (#782)

1.7.5.0 (not released)

  • Require Python 3.11.
  • Add KernelExecutionType (#775)

... (truncated)

Commits

Updates matplotlib from 3.10.1 to 3.10.8

Release notes

Sourced from matplotlib's releases.

REL: v3.10.8

This is a bugfix release in the 3.10.x series.

The primary highlights of this release are:

  • Properly allow freethreaded mode in the MacOS backend
  • Better error handling for MacOS backend

REL: v3.10.7

This is the latest bugfix release in the 3.10.x series.

The most important update in this release is that the minimum version of pyparsing has been updated to version 3.0.

REL: v3.10.6

This is a bugfix release in the 3.10.x series.

Highlights from this release include:

- Fix regression of hi-dpi support for Qt
- Fix race condition in TexManager.make_dvi & make_png
- Various documentation and other bugfixes

REL: v3.10.5

This is the fourth bugfix release of the 3.10.x series.

Included in this release is distributed wheels for Python 3.14 (including freethreaded) and Windows ARM.

There are also several smaller bugfixes.

REL: v3.10.3

This is the third bugfix release of the 3.10.x series

Commits
  • 1392cbe REL: v3.10.8
  • 0b9ebb3 Doc release prep v3.10.8
  • bc7b5c4 Merge branch 'v3.10.7-doc' into v3.10.x
  • 86b38d3 Github stats v3.10.8
  • 9512188 Merge pull request #30717 from meeseeksmachine/auto-backport-of-pr-30714-on-v...
  • d300769 Backport PR #30714: FIX: Gracefully handle numpy arrays as input to check_in_...
  • 799bc95 Merge pull request #30711 from ngoldbaum/v3.10.x
  • 134000b Merge pull request #30697 from ngoldbaum/fix-plotting-on-worker-threads
  • 5b8e219 TST: Run macosx backends in a subprocess
  • 878e71a Backport PR #29810: Declare free-threaded support in MacOS backend extension ...
  • Additional commits viewable in compare view

Updates monai from 1.4.0 to 1.5.2

Release notes

Sourced from monai's releases.

1.5.2

What's Changed

Fixed

Full Changelog: Project-MONAI/MONAI@1.5.1...1.5.2

1.5.1

Added

  • PyTorch 2.7 and 2.8 support (#8429, #8530)
  • Create SECURITY.md (#8546)
  • Add kwargs in array and functional file (#8508)
  • Add .coderabbit.yaml File (#8513)
  • Add input validation to ImageStats class (#8501)
  • Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
  • Add classifier free guidance unconditioned value (#8562)
  • Improved DiffusionModelEncoder to support output linear layers of different dimensions (#8578, #8580)

Fixed

  • Fix for insecure zip file extraction to address GHSA-x6ww-pf9m-m73m (#8568)
  • Fix for insecure use of torch.load and pickle to address GHSA-6vm5-6jv9-rjpj and GHSA-p8cm-mm2v-gwjm (#8566)
  • Torchvision fix for loading pretrained weights using current syntax (#8563)
  • Fix bug in MAISI vae (#8517)
  • Throw exception on invalid images in retinanet detector (#8515)
  • Fix: HistogramNormalized doc (#8543)
  • Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
  • Fix hardcoded input dim in DiffusionModelEncoder (#8514)
  • Fix for gdown downloading fails (#8576)

Changed

  • Update README badges to add research paper citations number (#8494)
  • CI: Add custom timeout to ci job in order to save resources (#8504)
  • Improve documentation on the datalist format (#8539)
  • Tests Cleanup and refactor (#8405, #8535)
  • Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
  • Updated supported version of Huggingface Transformers (#8574)

New Contributors

Full Changelog: Project-MONAI/MONAI@1.5.0...1.5.1

... (truncated)

Changelog

Sourced from monai's changelog.

[1.5.2] - 2026-01-28

What's Changed

Fixed

  • Fix Zip Slip vulnerability in NGC private bundle download (#8682)

[1.5.1] - 2025-09-22

What's Changed

Added

  • PyTorch 2.7 and 2.8 support (#8429, #8530)
  • Create SECURITY.md (#8546)
  • Add kwargs in array and functional file (#8508)
  • Add .coderabbit.yaml File (#8513)
  • Add input validation to ImageStats class (#8501)
  • Add support for optional conditioning in PatchInferer, SliceInferer, and SlidingWindowInferer (#8400)
  • Add classifier free guidance unconditioned value (#8562)
  • Improved DiffusionModelEncoder to support output linear layers of different dimensions (#8578, #8580)

Fixed

  • Fix for insecure zip file extraction to address GHSA-x6ww-pf9m-m73m (#8568)
  • Fix for insecure use of torch.load and pickle to address GHSA-6vm5-6jv9-rjpj and GHSA-p8cm-mm2v-gwjm (#8566)
  • Torchvision fix for loading pretrained weights using current syntax (#8563)
  • Fix bug in MAISI vae (#8517)
  • Throw exception on invalid images in retinanet detector (#8515)
  • Fix: HistogramNormalized doc (#8543)
  • Fix build failure by pinning pyamg to versions below 5.3.0 (#8548)
  • Fix hardcoded input dim in DiffusionModelEncoder (#8514)
  • Fix for gdown downloading fails (#8576)

Changed

  • Update README badges to add research paper citations number (#8494)
  • CI: Add custom timeout to ci job in order to save resources (#8504)
  • Improve documentation on the datalist format (#8539)
  • Tests Cleanup and refactor (#8405, #8535)
  • Improve Orientation transform to use the "space" (LPS vs RAS) of a metatensor by default (#8473)
  • Updated supported version of Huggingface Transformers (#8574)

[1.5.0] - 2025-06-13

What's Changed

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)

... (truncated)

Commits

Updates nibabel from 5.3.2 to 5.3.3

Release notes

Sourced from nibabel's releases.

5.3.3

DOI

Release notes

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)

Full Changelog: nipy/nibabel@5.3.2...5.3.3

Changelog

Sourced from nibabel's changelog.

5.3.3 (Friday 5 December 2025)

Bug-fix release in the 5.3.x series.

Bug fixes

  • Fix frame order for single-frame DICOM files (pr/1387) (Brendan Moloney, reviewed by CM)
  • Replace :class:dict literal with :class:set in test. (pr/1382) (CM)
Commits

Updates pandas from 2.2.3 to 3.0.1

Release notes

Sourced from pandas's releases.

pandas 3.0.1

We are pleased to announce the release of pandas 3.0.1. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.0

We are pleased to announce the release of pandas 3.0.0, a major release from the pandas 2.x series. This release includes various new features, bug fixes, and performance improvements, as well as possible breaking changes.

The pandas 3.0 release removed a functionality that was deprecated in previous releases. It is recommended to first upgrade to pandas 2.3 and to ensure your code is working without warnings, before upgrading to pandas 3.0.

Highlights include:

See the announcement blog post and the detailed release notes for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 3.0.0rc2

No release notes provided.

Pandas 3.0.0rc1

... (truncated)

Commits
  • e04b26f RLS: 3.0.1 (#64206)
  • 47909e6 [backport 3.0.x] ENH: Add item() method to ExtensionArray class (#64134) (#64...
  • a061bfd Backport PR #64199 on branch 3.0.x (DOC: cleanup 3.0.1 whatsnew) (#64201)
  • 085a385 [backport 3.0.x] BUG: Fix read_hdf failing on generic datetime64 dtype (#6400...
  • 5f17047 [backport 3.0.x] BUG: use fill_null fallback for bug in pyarrow 21 on Windows...
  • 0d3a8cb Backport PR #64122 on branch 3.0.x (REG: Allow RE2 syntax in str.contains and...
  • 78e1917 Backport PR #64185 on branch 3.0.x (TST: remove fixed xfail for PyArrow 23.0....
  • 75a42ca Backport PR #64168 on branch 3.0.x (TST: add legacy file generation and tests...
  • 46d443f Backport PR #64092 on branch 3.0.x (BUG: DataFrame.loc fills b'' instead of N...
  • 9d67932 Backport PR #64068 on branch 3.0.x (BUG: fixed to_timedelta with list of int ...
  • Additional commits viewable in compare view

Updates plotly from 6.1.2 to 6.5.2

Release notes

Sourced from plotly's releases.

v6.5.2

Fixed

  • Fix issue where pie trace legend, showlegend attributes don't accept array values [#5464 and #5465], with thanks to @​my-tien for the contribution!

v6.5.1

Fixed

  • Fix issue where Plotly Express ignored trace-specific color sequences defined in templates via template.data.<trace_type> [#5437], with thanks to @​antonymilne for the contribution!

Updated

  • Speed up validate_gantt function [#5386], with thanks to @​misrasaurabh1 for the contribution!
  • Update plotly.js from version 3.3.0 to version 3.3.1. See the plotly.js release notes for more information. [#5456]. Notable changes include:
    • Add support for arrays for the pie properties showlegend and legend, so that these can be configured per slice. [#7580]

v6.5.0

Updated

  • Update plotly.js from version 3.2.0 to version 3.3.0. See the plotly.js release notes for more information. [#5421]. Notable changes include:
    • Add hovertemplate for candlestick and ohlc traces [#7619]

Fixed

  • Fix bug where numpy datetime contained in Python list was converted to integer [#5415]

Full Changelog: plotly/plotly.py@v6.4.0...v6.5.0

v6.4.0

Updated

  • Update plotly.js from version 3.1.1 to version 3.2.0. See the plotly.js release notes for more information. [#5357]. Notable changes include:
    • Add hovertemplatefallback and texttemplatefallback attributes [#7577]
    • Add "SI extended" formatting rule for tick exponents on axis labels, allowing values to be displayed with extended SI prefixes (e.g., femto, pico, atto) [#7249]

Deprecated

  • Deprecate create_hexbin_mapbox in favor of create_hexbin_map, update related function calls [5358], with thanks to @​ajlien for the contribution!

v6.3.1

Updated

  • Update Plotly.js from version 3.1.0 to version 3.1.1. See the Plotly.js release notes for more information. [#5357]. Notable changes include:
    • Fix issue preventing Scattergl plots with text elements from rendering [plotly.js#7563]
  • Use native legends when converting from matplotlib [#5312], with thanks to @​robertoffmoura to the contribution!
  • Allow shared_yaxes to work with secondary axes [#5180], with thanks to @​gmjw for the contribution!

Fixed

  • Fix issue where width/height in plot layout were not respected during Kaleido image export [#5325]
  • Fix typo in default argument to _ternary_contour.py [#5315], with thanks to @​Lexachoc for the contribution!
  • Fix incorrect fig.show() behavior when ipython is installed [#5258]

Full Changelog: plotly/plotly.py@v6.3.0...v6.3.1

v6.3.0

Updated

  • Updated Plotly.js from version 3.0.1 to version 3.1.0. See the plotly.js release notes for more information. [#5318]

... (truncated)

Changelog

Sourced from plotly's changelog.

[6.5.2] - 2026-01-14

Fixed

  • Fix issue where pie trace legend, showlegend attributes don't accept array values [#5464 and #5465], with thanks to @​my-tien for the contribution!

[6.5.1] - 2026-01-07

Fixed

  • Fix issue where Plotly Express ignored trace-specific color sequences defined in templates via template.data.<trace_type> [#5437], with thanks to @​antonymilne for the contribution!

Updated

  • Speed up validate_gantt function [#5386], with thanks to @​misrasaurabh1 for the contribution!
  • Update plotly.js from version 3.3.0 to version 3.3.1. See the plotly.js release notes for more information. [#5456]. Notable changes include:
    • Add support for arrays for the pie properties showlegend and legend, so that these can be configured per slice. [#7580]

[6.5.0] - 2025-11-17

Updated

  • Update plotly.js from version 3.2.0 to version 3.3.0. See the plotly.js release notes for more information. [#5421]. Notable changes include:
    • Add hovertemplate for candlestick and ohlc traces [#7619]

Fixed

  • Fix bug where numpy datetime contained in Python list was converted to integer [#5415]

[6.4.0] - 2025-11-02

Updated

  • Update plotly.js from version 3.1.1 to version 3.2.0. See the plotly.js release notes for more information. [#5357]. Notable changes include:
    • Add hovertemplatefallback and texttemplatefallback attributes [#7577]
    • Add "SI extended" formatting rule for tick exponents on axis labels, allowing values to be displayed with extended SI prefixes (e.g., femto, pico, atto) [#7249]

Deprecated

@dependabot
Bump the python-requirements group in /envs with 22 updates
7aee0fc 
Bumps the python-requirements group in /envs with 22 updates:

| Package | From | To |
| --- | --- | --- |
| [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.3` |
| [coverage](https://github.com/coveragepy/coveragepy) | `7.8.2` | `7.13.4` |
| [einops](https://github.com/arogozhnikov/einops) | `0.8.1` | `0.8.2` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.3` | `4.5.5` |
| [kaggle](https://github.com/Kaggle/kaggle-cli) | `1.7.4.5` | `2.0.0` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.1` | `3.10.8` |
| [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.2` |
| [nibabel](https://github.com/nipy/nibabel) | `5.3.2` | `5.3.3` |
| [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `3.0.1` |
| [plotly](https://github.com/plotly/plotly.py) | `6.1.2` | `6.5.2` |
| [pre-commit](https://github.com/pre-commit/pre-commit) | `4.2.0` | `4.5.1` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `7.0.0` |
| [pytest-mock](https://github.com/pytest-dev/pytest-mock) | `3.14.1` | `3.15.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `9.0.2` |
| [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.3.3` |
| [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.15.4` |
| [safetensors](https://github.com/huggingface/safetensors) | `0.5.3` | `0.7.0` |
| [scikit-image](https://github.com/scikit-image/scikit-image) | `0.25.2` | `0.26.0` |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.6.1` | `1.8.0` |
| [scipy](https://github.com/scipy/scipy) | `1.15.2` | `1.17.1` |
| [timm](https://github.com/huggingface/pytorch-image-models) | `1.0.15` | `1.0.25` |
| [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.25.0` |


Updates `simpleitk` from 2.5.0 to 2.5.3
- [Release notes](https://github.com/SimpleITK/SimpleITK/releases)
- [Commits](SimpleITK/SimpleITK@v2.5.0...v2.5.3)

Updates `coverage` from 7.8.2 to 7.13.4
- [Release notes](https://github.com/coveragepy/coveragepy/releases)
- [Changelog](https://github.com/coveragepy/coveragepy/blob/main/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.8.2...7.13.4)

Updates `einops` from 0.8.1 to 0.8.2
- [Release notes](https://github.com/arogozhnikov/einops/releases)
- [Commits](arogozhnikov/einops@v0.8.1...v0.8.2)

Updates `jupyterlab` from 4.4.3 to 4.5.5
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.3...@jupyterlab/lsp@4.5.5)

Updates `kaggle` from 1.7.4.5 to 2.0.0
- [Release notes](https://github.com/Kaggle/kaggle-cli/releases)
- [Changelog](https://github.com/Kaggle/kaggle-cli/blob/main/CHANGELOG.md)
- [Commits](https://github.com/Kaggle/kaggle-cli/commits)

Updates `matplotlib` from 3.10.1 to 3.10.8
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.1...v3.10.8)

Updates `monai` from 1.4.0 to 1.5.2
- [Release notes](https://github.com/Project-MONAI/MONAI/releases)
- [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md)
- [Commits](Project-MONAI/MONAI@1.4.0...1.5.2)

Updates `nibabel` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/nipy/nibabel/releases)
- [Changelog](https://github.com/nipy/nibabel/blob/5.3.3/Changelog)
- [Commits](nipy/nibabel@5.3.2...5.3.3)

Updates `pandas` from 2.2.3 to 3.0.1
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.3...v3.0.1)

Updates `plotly` from 6.1.2 to 6.5.2
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v6.1.2...v6.5.2)

Updates `pre-commit` from 4.2.0 to 4.5.1
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.2.0...v4.5.1)

Updates `pytest-cov` from 6.1.1 to 7.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.1.1...v7.0.0)

Updates `pytest-mock` from 3.14.1 to 3.15.1
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-mock@v3.14.1...v3.15.1)

Updates `pytest` from 8.3.5 to 9.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.5...9.0.2)

Updates `rich` from 14.0.0 to 14.3.3
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v14.0.0...v14.3.3)

Updates `ruff` from 0.11.12 to 0.15.4
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.11.12...0.15.4)

Updates `safetensors` from 0.5.3 to 0.7.0
- [Release notes](https://github.com/huggingface/safetensors/releases)
- [Changelog](https://github.com/huggingface/safetensors/blob/main/RELEASE.md)
- [Commits](huggingface/safetensors@v0.5.3...v0.7.0)

Updates `scikit-image` from 0.25.2 to 0.26.0
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.25.2...v0.26.0)

Updates `scikit-learn` from 1.6.1 to 1.8.0
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.6.1...1.8.0)

Updates `scipy` from 1.15.2 to 1.17.1
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.15.2...v1.17.1)

Updates `timm` from 1.0.15 to 1.0.25
- [Release notes](https://github.com/huggingface/pytorch-image-models/releases)
- [Commits](huggingface/pytorch-image-models@v1.0.15...v1.0.25)

Updates `wandb` from 0.19.11 to 0.25.0
- [Release notes](https://github.com/wandb/wandb/releases)
- [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md)
- [Commits](wandb/wandb@v0.19.11...v0.25.0)

---
updated-dependencies:
- dependency-name: simpleitk
  dependency-version: 2.5.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: coverage
  dependency-version: 7.13.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: einops
  dependency-version: 0.8.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: jupyterlab
  dependency-version: 4.5.5
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: kaggle
  dependency-version: 2.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: matplotlib
  dependency-version: 3.10.8
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: monai
  dependency-version: 1.5.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: nibabel
  dependency-version: 5.3.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: pandas
  dependency-version: 3.0.1
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: plotly
  dependency-version: 6.5.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pre-commit
  dependency-version: 4.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest-cov
  dependency-version: 7.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: pytest-mock
  dependency-version: 3.15.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest
  dependency-version: 9.0.2
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-requirements
- dependency-name: rich
  dependency-version: 14.3.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: ruff
  dependency-version: 0.15.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: safetensors
  dependency-version: 0.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scikit-image
  dependency-version: 0.26.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scikit-learn
  dependency-version: 1.8.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: scipy
  dependency-version: 1.17.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: timm
  dependency-version: 1.0.25
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: wandb
  dependency-version: 0.25.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Feb 27, 2026
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