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Pull requests: Noble-Lab/casanovo
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Per-file validation loss logging and --tracking_peak_path
#637
opened May 4, 2026 by
PigeonMark
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Fine-tune from checkpoint with extended residue vocabulary
#636
opened May 4, 2026 by
PigeonMark
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docs: fix grammar, add badges, quick start, and application area descriptions (#625)
#633
opened Apr 29, 2026 by
Ghraven
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feat(config): allow val_check_interval to be a float (#627)
#632
opened Apr 28, 2026 by
SAY-5
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8 tasks done
fix(model_runner): only warn on residue mismatch when loading a checkpoint (#629)
#631
opened Apr 28, 2026 by
SAY-5
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5 tasks done
fix(model_runner): only warn about config/checkpoint alphabet mismatch when a checkpoint is loaded (#629)
#630
opened Apr 27, 2026 by
SAY-5
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fix: allow val_check_interval to be a float in (0, 1] or an int >= 1
#628
opened Apr 27, 2026 by
Ghraven
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Update README: add details, fix grammar, improve formatting
#626
opened Apr 21, 2026 by
codewithEshaYoutube
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1 task done
Add inference profiling infrastructure and benchmark command
#624
opened Apr 19, 2026 by
Shreenandbhattad
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3 tasks
Fix documentation errors and add missing content
#623
opened Apr 18, 2026 by
wsnoble
Contributor
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2 tasks
Updates model loading to also include an option to download timsTOF weights
#622
opened Apr 14, 2026 by
bhavyak7-lab
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Implement cache expiration for URL-based weights
#617
opened Apr 4, 2026 by
codewithEshaYoutube
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Fix shuffle buffer semantics for pre-batched training data
#614
opened Apr 2, 2026 by
maxprogrammer007
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refactor: calculate shuffle buffer size as number of batches instead of total samples
#613
opened Apr 2, 2026 by
mhmdkardosha
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perf: improve database search performance and reporting (#402)
#605
opened Mar 24, 2026 by
AsciiHermit
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feat: handled config options with Hydra/OmegaConf (Compose API) #545
#590
opened Mar 19, 2026 by
GauravSRC
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Added control frequency of reporting training loss
#586
opened Mar 12, 2026 by
mhmdkardosha
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