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Use sandbox mode which is more robust in singularity cleanup phase #193

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Use sandbox mode which is more robust in singularity cleanup phase #193

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a69b4e6
Use sandbox mode which is more robust in singularity cleanup phase
julianmorillo Mar 26, 2026
47406ac
Now with correct bash syntax
julianmorillo Mar 26, 2026
149dfaf
Now with the singularity build command in place
julianmorillo Mar 26, 2026
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11 changes: 8 additions & 3 deletions eessi_container.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -1039,9 +1039,14 @@ for arg in "${PASS_THROUGH[@]}"; do
ADDITIONAL_CONTAINER_OPTIONS+=(${arg})
done

echo "Launching container with command (next line):"
echo "singularity ${RUN_QUIET} ${MODE} ${ADDITIONAL_CONTAINER_OPTIONS[@]} ${EESSI_FUSE_MOUNTS[@]} ${CONTAINER} $@"
singularity ${RUN_QUIET} ${MODE} "${ADDITIONAL_CONTAINER_OPTIONS[@]}" "${EESSI_FUSE_MOUNTS[@]}" ${CONTAINER} "$@"
# using a sandbox image mode is more robust at the cleanup phase at the end
CONTAINER_SANDBOX="${CONTAINER%.sif}.sandbox"
echo "Building a sandbox image with command (next line):"
echo "singularity build --sandbox ${CONTAINER_SANDBOX} ${CONTAINER}"
singularity build --sandbox ${CONTAINER_SANDBOX} ${CONTAINER}
echo "Launching sandbox container with command (next line):"
echo "singularity ${RUN_QUIET} ${MODE} ${ADDITIONAL_CONTAINER_OPTIONS[@]} ${EESSI_FUSE_MOUNTS[@]} ${CONTAINER_SANDBOX} $@"
singularity ${RUN_QUIET} ${MODE} "${ADDITIONAL_CONTAINER_OPTIONS[@]}" "${EESSI_FUSE_MOUNTS[@]}" ${CONTAINER_SANDBOX} "$@"
exit_code=$?

# 6. save tmp if requested (arg -s|--save)
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