Update bioc-classes-methods.Rmd with extended text from working group#144
Update bioc-classes-methods.Rmd with extended text from working group#144MalteThodberg wants to merge 5 commits intoBioconductor:feature/bioc_classesfrom
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- move section to own chapter
- convert list to table
LiNk-NY
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The new section should integrate with the existing section and/or be in a separate section. Make a clearer distinction between tutorial and Bioc class overview.
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@MalteThodberg any thoughts on updating per @LiNk-NY ? It looks like this is added as an entirely separate file but would have to have changes to either integrate with or be referenced by the existing section https://github.com/Bioconductor/pkgrevdocs/blob/devel/important-bioc-features.Rmd#L75 ; also headers cannot be reused so they would have to be distinct or updated in one of the two if left separate. |
| `r BiocStyle::Biocpkg("SpatialExperiment")` for spatial -omics. | ||
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| `r BiocStyle::Biocpkg("MultiAssayExperiment")` for complex multi-omics datasets with arbitrary patterns of mixing data. | ||
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Could also add the mass spectrometry and proteomics-specific classes.
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Yes, I'm not into proteomics though, so I don't know which classes are considered reference.
Also, the text should now mention the Bioconductor Zulip instead of Slack
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We should start a "bioc classes" textbook or resource manual for this material. For now, the text doesn't seem to provide guidelines and is more didactic. |
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