Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-fip-dff Public
This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
AllenNeuralDynamics/aind-fip-dff’s past year of commit activity - dr-llm-modelling-tests Public
AllenNeuralDynamics/dr-llm-modelling-tests’s past year of commit activity - package-brain-atlas-assets Public
Reorganize various brain atlas data assets into a standard organization and metadata convention.
AllenNeuralDynamics/package-brain-atlas-assets’s past year of commit activity - aind-ophys-nwb Public
Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)
AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity - hcr-unmix-to-cells Public
A capsule to be run on HCR data after it has been processed by main the pipeline. Can run alternate unmixing strategies and generate cell x gene tables annotated with cell labels (e.g. de novo clustering or taxonomy mapping).
AllenNeuralDynamics/hcr-unmix-to-cells’s past year of commit activity - Aind.Behavior.Pirouette Public
A repository with source code for long-term, freely moving, electrophisiology recordings in mice
AllenNeuralDynamics/Aind.Behavior.Pirouette’s past year of commit activity - lamf-analysis Public
Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean
AllenNeuralDynamics/lamf-analysis’s past year of commit activity
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