diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/.gitignore b/acceptance/bundle/artifacts/job_environments_dynamic/.gitignore
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/.gitignore
rename to acceptance/bundle/artifacts/job_environments_dynamic/.gitignore
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/databricks.yml b/acceptance/bundle/artifacts/job_environments_dynamic/databricks.yml
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/databricks.yml
rename to acceptance/bundle/artifacts/job_environments_dynamic/databricks.yml
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/setup.py b/acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/setup.py
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/setup.py
rename to acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/setup.py
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/src/__init__.py b/acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/src/__init__.py
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/src/__init__.py
rename to acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/src/__init__.py
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/src/__main__.py b/acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/src/__main__.py
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/my_test_code/src/__main__.py
rename to acceptance/bundle/artifacts/job_environments_dynamic/my_test_code/src/__main__.py
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/out.test.toml b/acceptance/bundle/artifacts/job_environments_dynamic/out.test.toml
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/out.test.toml
rename to acceptance/bundle/artifacts/job_environments_dynamic/out.test.toml
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/output.txt b/acceptance/bundle/artifacts/job_environments_dynamic/output.txt
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/output.txt
rename to acceptance/bundle/artifacts/job_environments_dynamic/output.txt
diff --git a/acceptance/bundle/artifacts/whl_via_environment_key/script b/acceptance/bundle/artifacts/job_environments_dynamic/script
similarity index 100%
rename from acceptance/bundle/artifacts/whl_via_environment_key/script
rename to acceptance/bundle/artifacts/job_environments_dynamic/script
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/databricks.yml b/acceptance/bundle/artifacts/pipelines_environments_dynamic/databricks.yml
new file mode 100644
index 00000000000..e8e1d0f8018
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/databricks.yml
@@ -0,0 +1,17 @@
+bundle:
+  name: test-bundle
+
+artifacts:
+  my_test_code:
+    type: whl
+    path: "./my_test_code"
+    build: python setup.py bdist_wheel
+    dynamic_version: true
+
+resources:
+  pipelines:
+    test_pipeline:
+      name: "My Wheel Pipeline"
+      environment:
+        dependencies:
+          - ./my_test_code/dist/*.whl
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/setup.py b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/setup.py
new file mode 100644
index 00000000000..0bd871dd349
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/setup.py
@@ -0,0 +1,15 @@
+from setuptools import setup, find_packages
+
+import src
+
+setup(
+    name="my_test_code",
+    version=src.__version__,
+    author=src.__author__,
+    url="https://databricks.com",
+    author_email="john.doe@databricks.com",
+    description="my test wheel",
+    packages=find_packages(include=["src"]),
+    entry_points={"group_1": "run=src.__main__:main"},
+    install_requires=["setuptools"],
+)
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__init__.py b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__init__.py
new file mode 100644
index 00000000000..909f1f3220d
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__init__.py
@@ -0,0 +1,2 @@
+__version__ = "0.0.1"
+__author__ = "Databricks"
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__main__.py b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__main__.py
new file mode 100644
index 00000000000..ea918ce2d53
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/my_test_code/src/__main__.py
@@ -0,0 +1,16 @@
+"""
+The entry point of the Python Wheel
+"""
+
+import sys
+
+
+def main():
+    # This method will print the provided arguments
+    print("Hello from my func")
+    print("Got arguments:")
+    print(sys.argv)
+
+
+if __name__ == "__main__":
+    main()
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/out.test.toml b/acceptance/bundle/artifacts/pipelines_environments_dynamic/out.test.toml
new file mode 100644
index 00000000000..f784a183258
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/out.test.toml
@@ -0,0 +1,3 @@
+Local = true
+Cloud = false
+EnvMatrix.DATABRICKS_BUNDLE_ENGINE = ["terraform", "direct"]
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/output.txt b/acceptance/bundle/artifacts/pipelines_environments_dynamic/output.txt
new file mode 100644
index 00000000000..e008a71003f
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/output.txt
@@ -0,0 +1,38 @@
+
+>>> [CLI] bundle deploy
+Building my_test_code...
+Uploading .databricks/bundle/default/patched_wheels/my_test_code_my_test_code/my_test_code-0.0.1+[UNIX_TIME_NANOS][0]-py3-none-any.whl...
+Uploading bundle files to /Workspace/Users/[USERNAME]/.bundle/test-bundle/default/files...
+Deploying resources...
+Updating deployment state...
+Deployment complete!
+
+>>> find.py --expect 2 whl
+.databricks/bundle/default/patched_wheels/my_test_code_my_test_code/my_test_code-0.0.1+[UNIX_TIME_NANOS][0]-py3-none-any.whl
+my_test_code/dist/my_test_code-0.0.1-py3-none-any.whl
+
+=== Expecting the patched wheel in the pipeline environment
+>>> print_requests.py --keep //api/2.0/pipelines
+{
+  "method": "POST",
+  "path": "/api/2.0/pipelines",
+  "body": {
+    "channel": "CURRENT",
+    "deployment": {
+      "kind": "BUNDLE",
+      "metadata_file_path": "/Workspace/Users/[USERNAME]/.bundle/test-bundle/default/state/metadata.json"
+    },
+    "edition": "ADVANCED",
+    "environment": {
+      "dependencies": [
+        "/Workspace/Users/[USERNAME]/.bundle/test-bundle/default/artifacts/.internal/my_test_code-0.0.1+[UNIX_TIME_NANOS][0]-py3-none-any.whl"
+      ]
+    },
+    "name": "My Wheel Pipeline"
+  }
+}
+
+=== Expecting the patched and original wheels to be uploaded
+>>> jq .path
+"/api/2.0/workspace-files/import-file/Workspace/Users/[USERNAME]/.bundle/test-bundle/default/artifacts/.internal/my_test_code-0.0.1+[UNIX_TIME_NANOS][0]-py3-none-any.whl"
+"/api/2.0/workspace-files/import-file/Workspace/Users/[USERNAME]/.bundle/test-bundle/default/files/my_test_code/dist/my_test_code-0.0.1-py3-none-any.whl"
diff --git a/acceptance/bundle/artifacts/pipelines_environments_dynamic/script b/acceptance/bundle/artifacts/pipelines_environments_dynamic/script
new file mode 100644
index 00000000000..5f379694431
--- /dev/null
+++ b/acceptance/bundle/artifacts/pipelines_environments_dynamic/script
@@ -0,0 +1,13 @@
+trace $CLI bundle deploy
+
+trace find.py --expect 2 whl
+
+title "Expecting the patched wheel in the pipeline environment"
+trace print_requests.py --keep //api/2.0/pipelines | contains.py \
+  'artifacts/.internal/my_test_code-0.0.1+' \
+  '!artifacts/.internal/my_test_code-0.0.1-py3-none-any.whl'
+
+title "Expecting the patched and original wheels to be uploaded"
+trace jq .path < out.requests.txt | grep import | grep whl | sort
+
+rm out.requests.txt
diff --git a/bundle/libraries/switch_to_patched_wheels.go b/bundle/libraries/switch_to_patched_wheels.go
index 0a9d1846041..bfd2c01999f 100644
--- a/bundle/libraries/switch_to_patched_wheels.go
+++ b/bundle/libraries/switch_to_patched_wheels.go
@@ -74,6 +74,27 @@ func (c switchToPatchedWheels) Apply(ctx context.Context, b *bundle.Bundle) diag
 		}
 	}
 
+	for pipelineName, pipelineRef := range b.Config.Resources.Pipelines {
+		if pipelineRef == nil {
+			continue
+		}
+
+		env := pipelineRef.Environment
+		if env == nil {
+			continue
+		}
+
+		for depInd, dep := range env.Dependencies {
+			repl := replacements[dep]
+			if repl != "" {
+				log.Debugf(ctx, "Updating resources.pipelines.%s.environment.dependencies[%d] from %s to %s", pipelineName, depInd, dep, repl)
+				env.Dependencies[depInd] = repl
+			} else {
+				log.Debugf(ctx, "Not updating resources.pipelines.%s.environment.dependencies[%d] from %s. Available replacements: %v", pipelineName, depInd, dep, slices.Sorted(maps.Keys(replacements)))
+			}
+		}
+	}
+
 	return nil
 }