giga_preprocess2

Preprocess datasets using fMRIPrep.

To clone this repository:

git clone  git@github.com:SIMEXP/giga_preprocess2.git

Project structure

One dataset, one directory
Shared command line tool in scripts/
- fmriprep_slurm_singularity_run.bash: modified version of fmriprep-slurm accompanied script. Allow specifying output directory.
Documentation in docs

/project/ctb-pbellec/hwang1/giga_preprocessing_2/